NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157377_11013185

Scaffold Ga0157377_11013185


Overview

Basic Information
Taxon OID3300014745 Open in IMG/M
Scaffold IDGa0157377_11013185 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008472Metagenome332Y
F039923Metagenome162Y
F058574Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0157377_110131851F008472N/AVWRAKQTTDRGQPSANIKMAFLLPSKFRAKMDQEVYLDFDESEYEEIVAKLTVIQQAIFDKPVKHQHLKALYVKGLVDGKSMNKM
Ga0157377_110131852F058574GAGMDHRLKNRSVHDRLGKRVVDQNWADYEEKSDEEEYVW*
Ga0157377_110131853F039923N/AMIILISSMDRPVVGLRLSKLSILLTALWVIISSRQFQTFVPTMSEERTI

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