Scaffold Ga0134506_125189

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134506_125189

Scaffold Ga0134506_125189

Overview

Basic Information
Taxon OID	3300014767 Open in IMG/M
Scaffold ID	Ga0134506_125189 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Washington
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	697
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Source Dataset Sampling Location
Location Name	USA: University of Washington
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068811	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134506_1251892	F068811	AGGA	MDQDGSEHNICSNREGLRPGKKQHGASGWKQIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNGCRI*

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