NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119946_1026042

Scaffold Ga0119946_1026042


Overview

Basic Information
Taxon OID3300014801 Open in IMG/M
Scaffold IDGa0119946_1026042 Open in IMG/M
Source Dataset NameAquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment System In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014379Metagenome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0119946_10260421F014379N/AVKEYLFKGVIVNFDYNFALGGLDTVTVYCADDFYLLAQTYLAEFNVDEELSSARLTAILDRPEVAYPVATRDISTGTQTLGGAAAYTIPNGTNVLGYCSKINEAEQGRLFIARDGDITFQPRIGTTLDPSVADFHDDGTNIPYNGLGITFEADQTTNRAVVQILGSSNPQVADDTGSQALYFIQTYSITDSLLHSNDAALA
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Institute for Fundamental Biomedical Research
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