NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1000306

Scaffold Ga0119954_1000306


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1000306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17419
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001806Metagenome / Metatranscriptome631Y
F003687Metagenome / Metatranscriptome473Y
F027508Metagenome / Metatranscriptome194Y
F097236Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0119954_100030610F027508AGGAMTASSGQDNASDFDINRFEQLLERLEASKGRQQRQKSVEGRRDIFSQGLASMMSNF*
Ga0119954_100030620F001806N/AMGAIVKEQSICTRMDDETRLKRVEALETIKNKALEKAQRGEDALEVRDFVTSAKKELAYELPDEDAFRKAMKATLAYKAKKG*
Ga0119954_100030622F097236GGAMINLTSGWVQHPGVSGGWHLEYVDPVAGFDISIVTGPKGSGLMGVIAPGQPTTYEAWLPGLSNPTGYLTLDEIRGIIMYLREKHRDDTMYAD*
Ga0119954_100030623F003687N/AMTPKAVERLLTQDARLLARRDSPVIDEELEAQRQAALEVFFKWQDHACQFQDVIPFCVVLQRKVDLNRDLLRWERQNAV*
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