Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1000381 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15768 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F039606 | Metagenome / Metatranscriptome | 163 | Y |
F040004 | Metagenome / Metatranscriptome | 162 | N |
F052563 | Metagenome / Metatranscriptome | 142 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119954_100038111 | F039606 | AGGAG | MDKDRAIITQVAAKIASDLVNKEADTDTKLGEFTTLFTSVKDIMFEIIDGSQDAQIYEMAKSTFNATPVNNSATSESVGGVLQIIGKQHGDLPDWLIKACKRDGVTKVYDNRDGLSINPKRPWFKAVDADKAYWAPKTR* |
Ga0119954_10003814 | F052563 | N/A | MSSKESQDWIYDIIPAKQVEEIESKAKSLQHNLDNGVNVVLSATNDSAIKLCRAYRDGTQGNLDAWLHIMGFLSALIDTIEEHLNEEGIDPYAK* |
Ga0119954_10003817 | F040004 | GAGG | MKESRWDIPKPNFKKDLEFGKQGEDQVKQFLQGIVNGSFEVKSDRYRNGKMVVEIAQNPRKHGWKPSGIMITEAEWWVYVYTMNQAMIVVSTERLKRYIKMLPKSRIRLFAEGTNNPAKGYLLLPEEVSQLLYDPAYDDVKE* |
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