NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1001091

Scaffold Ga0119954_1001091


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1001091 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9184
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045790Metagenome / Metatranscriptome152N
F055822Metagenome / Metatranscriptome138Y
F091922Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0119954_100109112F091922GGAGGMSKIVNYTAELEQLITKTLLPAYEDYCRRYPFSPLAKGPINDDIMREIKPARDTCALLKPRKNLS*
Ga0119954_10010912F045790AGGMLDIKELREELLENAMDYLDEKHQTQKCFAKMFFKHKLTQGIMVDNYQSYMPQIYTPQEAIELAKAMETYVIGGNGK*
Ga0119954_10010918F055822AGGAGMAGYTREFLVDAYLWRFLKALSIEKLVKLEQDAYYDYDKYGKEKFRQYASLDSEYIKRXXXXGYHIL*
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