NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1001601

Scaffold Ga0119954_1001601


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1001601 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7353
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004727Metagenome / Metatranscriptome426Y
F090468Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0119954_10016011F004727N/AMKVTITYHDNESFTIEEVVKQAVHNYGKSATVEVMPESTMAYDHIYFGLQQLVTHEQLSLLFERDAGYQQDIKKLREEVLYKVTEIIDQVIIDNESKVG*
Ga0119954_100160112F090468N/AVYNIISIDKEKHIVKLLEFTYTKQDGSVSKRAVIELVTPNKFIEGWDVSNLDEQTFVQFTQSMGELRRRQHEETMQLLGDFDLKHNYRRFKPESMTDVQVDYV*

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