Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1018333 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1439 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F024549 | Metagenome / Metatranscriptome | 205 | Y |
F038205 | Metagenome / Metatranscriptome | 166 | Y |
F048252 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0119954_10183331 | F000447 | N/A | MGHIEIFRMNDEGAGWVDLDEATPDELFNIKIGLLNEGAFD* |
Ga0119954_10183332 | F038205 | AGGA | MGNILEILAVECDECGGAGFVFWGDENNYDVESCDCSLDKWVI* |
Ga0119954_10183333 | F024549 | N/A | MYRLDTWYDGELEFTHKFSDALTAFEAFAKCYDVGFANEFATYNLSMPDGKMYTKNFSRLGLVSIK* |
Ga0119954_10183334 | F048252 | AGGA | MMTRKDYIATAEIMKYVSDKTHPALFSKVIVDFALMFAKDNPXXXXIL* |
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