Basic Information | |
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Taxon OID | 3300014838 Open in IMG/M |
Scaffold ID | Ga0182030_10000599 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 69224 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000065 | Metagenome / Metatranscriptome | 2788 | Y |
F001385 | Metagenome / Metatranscriptome | 709 | Y |
F001403 | Metagenome / Metatranscriptome | 704 | Y |
F024149 | Metagenome / Metatranscriptome | 207 | Y |
F049409 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182030_1000059917 | F001385 | N/A | VIGDAQNEVPAGVRAVAALFALCAIYLGVAGISMMARPGSVPMSSGAWLLFSLELAGPYMFLLTAAAGFAVSLGLMKLNNIARHVAMLIAIAGIVMLVPPVSDAVALANVKGLIAGGLGIIVRVIVAWYLGRAEVAEQFQRPR* |
Ga0182030_1000059927 | F024149 | N/A | MLRESSCILQAAIGPRKTLLENARCLRCNRELESGRKFVAIYMFAQTVGIKPRQKSAAHRIVFCPQCSVSLALGLSPEGALNVAAWDMIRDLVSSDPALNQAAWENLRGVVRLLEADESESEPEQRSDAWVNFSRAV* |
Ga0182030_1000059930 | F001403 | N/A | METTSLDFAYLESDPRTTLPSACVYLKTGGREDYDGIKAAKLVSSPCLSFIELDAEIRRLHAELDEIRARAKKKFYKAYSTAVGA* |
Ga0182030_1000059934 | F000065 | AGGA | MTDVTNHPIRKLRKAAQPPLSHRGATPDSERAKKPRLAEPSATGQQLGPGDRVEGLGDFGTPTGEFGTVEQTNEDDAVVRWDDDGRIRIHKPWLKKI* |
Ga0182030_1000059936 | F049409 | AGAAGG | MKTSLKSVVETLNRDANELERCAQKLNSISHDLALDLGSDTELINLKVASIRKRVESMERWE* |
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