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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014838 Open in IMG/M |
| Scaffold ID | Ga0182030_10066289 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5435 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F002261 | Metagenome / Metatranscriptome | 577 | Y |
| F018347 | Metagenome / Metatranscriptome | 235 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182030_1006628910 | F018347 | AGG | MADQAERVILEAEDHVSPVVDKANAGLDRFEKQAESSHGKVIRISDQTRTSVQRLIASLEKQAETYGKSGVDRLITQRDQLLQRYNREPQAIDAITKSYEKMIAMEEKVARESLALKAAKETEEALQKQSEAIKGFGERVSQFMENPLQGAKGAVSSVLTALGPFGIAVATGAAVLGTIAVSAFEAAK |
| Ga0182030_100662892 | F002261 | N/A | MSDWSTIDAAANVVMQDTFGEPVVYQPVQSGAAVGSPLTITAIRHAREREESGATASFEEISVNPSDFENPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLSLLQRS* |
| Ga0182030_100662899 | F000451 | AGG | MARFQTVIKTARFVYSPYTASEMQGFGQVLADSIRARIQSGQNIYDQAAAPLKSGLSGRRGYPDYKSARGLKPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEALSGRRQTASQIAAFNNRREAQWGVSPHDRRVVLAAFQARPFVMLKAA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |