NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182030_10265465

Scaffold Ga0182030_10265465


Overview

Basic Information
Taxon OID3300014838 Open in IMG/M
Scaffold IDGa0182030_10265465 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1941
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y

Sequences

Protein IDFamilyRBSSequence
Ga0182030_102654652F004301GGAGMTAMQFSLFDARPTAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLCSYPVKVMRWIRHLIFTLNAERREVLSAIADLEPKVAALSQIVGNAIQ*
Ga0182030_102654653F003764GAGMQIQLDSPYVHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSAVPRLRREEIIEEEQRLASLYASILFEIGSAFGLRAADELKVRIETACILDDWECPPAEQGLLFPIPNEPMTEASPATARK*
Ga0182030_102654655F003942GGAGMLGRRLNPTIHRHEDVELIEVHSEYLECSFLVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIELQRQAGHTIYADHLSTMLYGTGPNPARS*
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