NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182027_10070254

Scaffold Ga0182027_10070254


Overview

Basic Information
Taxon OID3300014839 Open in IMG/M
Scaffold IDGa0182027_10070254 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4305
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0182027_100702544F006683GGAGGMNRPDIAVRQVHLRVNKIAFESVRVRHDHRSRDFDIVIDEPHIGRFALTAAVPSLELRDGGSDWRQVTLDELKKILSDDGELADAAEEPRASETAERESFNRLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFASNLFMVLSVPKARACLQRAGFQAKFDSETVLFDGCNGQAVQLIQGKYSLPRAKS*
Ga0182027_100702547F004185GGAGGMSLEKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNDITGSTSERFNTTRDEHGGLVSINSADPGLLIHRKK*
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