Scaffold Ga0182027_11003168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182027_11003168

Scaffold Ga0182027_11003168

Overview

Basic Information
Taxon OID	3300014839 Open in IMG/M
Scaffold ID	Ga0182027_11003168 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	855
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000926	Metagenome / Metatranscriptome	832	Y
F001490	Metagenome / Metatranscriptome	685	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182027_110031682	F001490	N/A	MNPSQTTQLLQQIAQIQHMEPGKLCVIGQGPSGPYYNLQCREGGKSVTRYIPADQAKVVAQHTANYQQFQTLVSQYAQLIIAQTRAERTAGFKKKTSRPKSSWPKTRKSNN*
Ga0182027_110031683	F000926	AGGA	MARFQAEEPNGVAVQQLEVLVRTAVFKSANALVGWLLQRAADRIDAAYQPKPGQQYKGRVALRVDCIFGVLELKRAYYYHGGKHQGHYPADAALGLEGSTTPALARLVCFEGA

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