Scaffold Ga0180300

Basic Information
Taxon OID	3300014886 Open in IMG/M
Scaffold ID	Ga0180300_10001404 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11123
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (48.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11123

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (48.15%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.0154	Long. (^o)	-111.3798	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Gulf of California

Coordinates

Lat. (^o)

27.0154

Long. (^o)

-111.3798

Alt. (m)

Depth (m)

2000

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F050821	Metagenome	144	N
F057027	Metagenome	136	N
F059532	Metagenome	133	N
F083515	Metagenome	112	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0180300_1000140413	F050821	N/A	MPFKKKENTKFGRFNMIVKEMYCDYCKEETFHECQSNELWRCIQCQNTRFEIINIPQNEIDWERPVRYLWRSGDIAYVTSALAPNILRLDEMKELLEGRRIRIPLFKIKDKFLPKYY*
Ga0180300_1000140414	F057027	N/A	MAKKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITGMGNYNYEVVYRKPAKEPEIVDENKIEEIVKKVMSSGDKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG*
Ga0180300_1000140418	F059532	GAG	MRNILLLGDLHCGSTEGLWHPDFVTREGQRIKLSPLQEELYEKWLLLRERLPDYEAVFLLGDITHGLGSKEFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPVYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNICVL*
Ga0180300_100014046	F083515	AGGAGG	MKVKRFERIESLSKFLEREEREEISVKNVSVVPHISDVFYVFYNEGKNYDITSKIIDFRNFLVREEKTLNDIIRSIEQERMYWQSVDSPTSKGISGYLSWLKDQLTMSAVAVNEMMRETKELLMRRY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0180300_10001404

Overview

Ecosystem & Geography

Associated Families

Sequences