Scaffold Ga0180300_10019177

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0180300_10019177

Scaffold Ga0180300_10019177

Overview

Basic Information
Taxon OID	3300014886 Open in IMG/M
Scaffold ID	Ga0180300_10019177 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3090
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.0154	Long. (^o)	-111.3798	Alt. (m)		Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057027	Metagenome	136	N
F098395	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180300_100191771	F057027	AGGAGG	MARKWDRGVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG*
Ga0180300_100191776	F098395	N/A	MKIEVITPLDLEDFVKRIESLEEDSKLHDSLFHDVYENIDQLKKQLNELTKQVKYLQSDEEPYSKE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.