NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180300_10071134

Scaffold Ga0180300_10071134


Overview

Basic Information
Taxon OID3300014886 Open in IMG/M
Scaffold IDGa0180300_10071134 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1424
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055334Metagenome138N
F076704Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0180300_100711342F055334AGGAMTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLRDLDTIMEKLRTLRHDTSKWYELDYKGGVDLEYSPIEKWILQSAVIHVKVEA*
Ga0180300_100711343F076704AGGAGGMPEYGAVKGWKNRIRIGLESAVNESIWHDGRDPLLNSLTMDTSVDIDKIFVIGSRDAVSMIEGIQEVTGSLERNLYSKNATYNEFIYAGNNSHLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH*
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