NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180302_10001240

Scaffold Ga0180302_10001240


Overview

Basic Information
Taxon OID3300014887 Open in IMG/M
Scaffold IDGa0180302_10001240 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12021
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026175Metagenome198N
F038025Metagenome166Y
F072933Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0180302_100012402F026175AGGMALQSIKILNTGKENITKLLVGMDSPYSYKAIGVGNSDTAAAETDEHLLGSETNFKDGNTSYYKNANGSYVAQWNSTWVYDDLPSNQISEAAVAMNATNGTTSCLLRCTFDTVTLDADSSFALTLRVIPTQG*
Ga0180302_100012404F038025GAGMMKRFTSLIADAEILRRSFWWLYQKGWISKDSVSESDYKDLGLDFPDGYERFDRKEIREERFIKTRLGKRISLERLKDLI*
Ga0180302_100012405F072933N/AMQTNTTIILDLASLNPNTTSDLYGPVNLGNSIKCAITAQVYFRENASENVRTLILSSWDDTNYDTEPYAQFDVPVAGNQTVRTTYAILPDPKYIKARVVNLDSNVTADSVKVIVTYTEP*
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