NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180302_10006674

Scaffold Ga0180302_10006674


Overview

Basic Information
Taxon OID3300014887 Open in IMG/M
Scaffold IDGa0180302_10006674 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5641
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0180302_100066745F016098GGAGGMSEERKYVYLRRTRSGNGVRMRDGEIIYVASIRSLEAFLHGDREFVAFMRFPYRQIAGENAERDILYTFCDKCGAGRFFRKISEDKWRCETCGTERTTTELIEKMRSILESD*
Ga0180302_100066747F024940GAGMEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMITQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYAFEEKKEREEDENRDTF*
Ga0180302_100066748F040961AGGCGGMVNAVECRWSEEQAKGLLTFLIAEKKRHEKDIHNIERSIQRIKREFGLTDADIAKCEELAWLYVEF*
Ga0180302_100066749F016235AGGAGGMDKSKISSSPPLFFHKRWSYRRGYQKCVKYIGIDKNDERFGRGFPLCAVIKFRIPVYRYTPCTQEIAKLLATLRILYGEEYMEELLALAEVEYLKMRREQKWHIHFGENSD*
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