Scaffold Ga0180302

Basic Information
Taxon OID	3300014887 Open in IMG/M
Scaffold ID	Ga0180302_10015302 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3748
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3748

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.0154	Long. (^o)	-111.3798	Alt. (m)	Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mexico: Gulf of California

Coordinates

Lat. (^o)

27.0154

Long. (^o)

-111.3798

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F017081	Metagenome	242	Y
F055335	Metagenome	138	N
F058593	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180302_100153021	F058593	N/A	HYTVILTPVTSSIVSSEDYITFNLSYEIIDDEINLSLTYNDALGQTQNLTFFVYNSTTLLYQQNFTNTSTVSVNFTVSYRPGEEYMWGYSAFHSRFGEMGRSRILRIAWFLDLGISRTYCTWIALAIILFLTGIFSFTTVKFGYITIPAISLIFAWIGWLPNTNIIIIALCLGILAYMSKREKEVGV*
Ga0180302_100153022	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPVNYVDVSAVQTPQEWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMFVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*
Ga0180302_100153023	F017081	GGAG	MWKGRWWKGVCILGIFILFIATAQAIDITEIIATETQIKITIANTTSSGYIFVSPSNTSFPYAYSHQGNGIYTITATFLKVNTTYYVKACDNENCSDIMSVNVSKEEKLLEQNFTTPFNNLMQGGNLLNISKLGETIPSVYTSLLTDIFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGSMLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR*
Ga0180302_100153025	F014691	AGGAGG	VKGIGFVSAILILMFVAVAVFTLTIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMTIGVFLSLVRVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0180302_10015302

Overview

Ecosystem & Geography

Associated Families

Sequences