NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180302_10021602

Scaffold Ga0180302_10021602


Overview

Basic Information
Taxon OID3300014887 Open in IMG/M
Scaffold IDGa0180302_10021602 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F015290Metagenome255N
F024453Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0180302_100216022F007460AGGTGGMSDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW*
Ga0180302_100216023F015290AGGAGGMLNNKGQAGEIAVFVILAFMVAFAYIFISPIVQNIKDVIPTIADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0180302_100216024F024453AGGAGGVRVKVSDRDISKEQDALKFRDEIVMSFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEAEVGEEGESGREEEIQKSVEKVRSVHELAQVRRVNAEQQRTGR*
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