NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180302_10025658

Scaffold Ga0180302_10025658


Overview

Basic Information
Taxon OID3300014887 Open in IMG/M
Scaffold IDGa0180302_10025658 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2863
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F024940Metagenome203Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0180302_100256585F016098AGGAGGMSEERKFVYMRKTQSGNGVRMRDGEIVYVASIRSLEQFLQGEREFVAFAKMPYRRIPNEDNARNLIYTWCDKCGGLRFFRKISEDKWKCEMGGTERTATELIEKMRSILQTD*
Ga0180302_100256587F024940AGGAGGMEREIIHKKIRSIKELREFITEYLIEHSEMRAKAMISTNINAVFYEQGWMDCLRTIRDLIAKEGLLMYRYTESEEKERAEDKNRDTF*
Ga0180302_100256589F024941AGGAGGMAYYFWGRLGLTKGEEYRKLLEKAWNLGWSQRKFFREARAKGLGYAEALMREDWHRFGYVESARTYHGKLRVHIFFDEVVKKLREEEGWTWSEIREFLKERKQPSKWTPET
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