Scaffold Ga0180302_10052043

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180302_10052043

Scaffold Ga0180302_10052043

Overview

Basic Information
Taxon OID	3300014887 Open in IMG/M
Scaffold ID	Ga0180302_10052043 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1938
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.0154	Long. (^o)	-111.3798	Alt. (m)		Depth (m)	2000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055333	Metagenome	138	Y
F104193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180302_100520433	F055333	AGGTGG	MGESLQNVRAVKVCLAGRSTGMGAYTQHYLYSIRQRKLLEPHHTETSRTGNHWDDIYYLLPGKYFLAIKDITNSGKHRCRYALLRVLTQEEYREKIKNDKYAMQNFDHYYRNYAYEIIDLPSERPPAPYVEPPCSCLREDAEY*
Ga0180302_100520434	F104193	AGG	MLEKLDRVLELLAERERTFEELKAETSLSDETLNLVIDFFLAHDFATKDNNRIRLTDSGRKFLEL*

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