NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164321_10114998

Scaffold Ga0164321_10114998


Overview

Basic Information
Taxon OID3300014903 Open in IMG/M
Scaffold IDGa0164321_10114998 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.009Long. (o)-111.4081Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0164321_101149981F004866GAGMAIVQKVDLKLKVNIDESIKYQILTYCFFNDILVTNSDLKFLCELSKTPDIELTKFCVQLVNMNIFKSPQSARNAISKAEKKGLLSKKGNNKKTITIESSINIQTEGLVLLDYKILGNASQVTQGV*
Ga0164321_101149982F006666N/AMHPKSHKEFRNEIAEIAEVHPQVVEDFITFYYAKVRRKLSELSFPRIYVEGLGTFELRKSKLEKAIKKNKSLLGNIAKRTYNGYAKSEDIKINITQMEAALEQIHKDLLEKKSFKNEK*
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