NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180301_10000204

Scaffold Ga0180301_10000204


Overview

Basic Information
Taxon OID3300014911 Open in IMG/M
Scaffold IDGa0180301_10000204 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay16, Core 4569-2, 12-15 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45304
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (79.01%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0154Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046123Metagenome151Y
F055333Metagenome138Y
F098394Metagenome103N
F104193Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0180301_1000020420F098394N/AMDVLLATLGSFAALASFTLSLTIWLWRLRRNEIAHLYRRMEQIERRIENIEEDLTELRERVARLEERV*
Ga0180301_1000020428F055333N/AMGESLQNVRAVKVSLPGRSTGMGAYTQHYLYSIRQRKLLEPHHTETSRTGNHWDDIYYLLPGKYFLAIKDITNSGKHRCRYALLRVLTQEEYREKIKNDKYAMQNFDHYYRNYAYEIIDLPSERPPAPYVEPPCSCLREENAEY*
Ga0180301_1000020429F104193AGGMLEKLDRVLELLAERERTFEELKAETPLSEETLNLVIDFFVAHDFATKDNDCIKLTDSGRKFLEL*
Ga0180301_1000020472F046123AGGMPCPYKEGSDMCWLCWNWNEYEEYCIPSEEDRHFQLIDEFKDIDPKTYNERMQMLKDMGLIPLHRAVKAGFVKQQRTLSDFGVVVRRNVENRQNTAEGDGLVMIEVKSDESGRNQKI*
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