NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164310_10005801

Scaffold Ga0164310_10005801


Overview

Basic Information
Taxon OID3300014913 Open in IMG/M
Scaffold IDGa0164310_10005801 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7241
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0164310_100058011F040961GAGMVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFSLTDADIAKC
Ga0164310_1000580112F009582GAGMPAKRGRREFVGGTGRGVKEARVDVVLQRVNEKIGSELDVSPSHISRYGVNNIFQRVFAYLLGWKTNGEPQKIAVTESGLVKVGISGAGFEEIDVLKGTATADWSDTLEFGWVPNRIRFEAVDYPYIAKFSKDGVTWSEEVYVDGETPRDFDICARYVKVRRYGGTDATYWIIGMR*
Ga0164310_1000580113F011723GAGGMVIYNKGLSRDNSTDEGKEIFSLTSKEEEKYKVRRIVITDVEDNPLVMEIWVERDRVGENIPLEVASDIAPERVIDIDTEIPVGYNFSVKIKPQNSGHQGSVRGWVEYEIIE*
Ga0164310_100058013F016098AGGAGGMSEERKYVYMRRTQSGNGVRIRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNENNARNLVYTWCDKCQGLRFFRKISEDKWRCEMCGTERTATELIEKVRSILDEGEQ*
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