Scaffold Ga0164310

Basic Information
Taxon OID	3300014913 Open in IMG/M
Scaffold ID	Ga0164310_10007458 Open in IMG/M
Source Dataset Name	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014913 Open in IMG/M

Scaffold ID

Ga0164310_10007458 Open in IMG/M

Source Dataset Name

Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6469
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6469

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Gulf of California
Coordinates	Lat. (^o)	27.0151	Long. (^o)	-111.3798	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Gulf of California

Coordinates

Lat. (^o)

27.0151

Long. (^o)

-111.3798

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164310_100074581	F024941	AGGAGG	MAYAFWGRLGLTKGEEYRKLLERAWNLGWSQRRFFREARARGLGYAEKLMREDWHRFGYVESARTYGGKLTQHIFFDEVVKKLHYEEGWSWKEIKEFLNERKEPERWTPETKVKERIYKSYLSEALPEK
Ga0164310_1000745813	F009582	GAG	MVRRRGRREFIGGTGRGVREARVDVILQRVNEKIGSELNVSPSHIFRYGVNNIFQRSFAYLLGWKSNGEPQKIAVTESGLLKVGIAGAGFEDIDVLKGTATVDWSDVLEFSWAPNRIRFESLDYPYVAKFSKDNVTWSEEIYVDEGTPRDYDICARYIKVKRYGGTDAKYWIVGMR*
Ga0164310_100074582	F040961	AGGCGG	MVNAAECRWSEEQAKGLLTFLIAEKKRHERDIYNIERSIQRIKREFGFTDADIAKCEELAWLYVEF*
Ga0164310_100074583	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMFANNTFVIAYEQGFLDCLKTIRDLLSKEGLLMYRYVFEEKKEREEDEHRDTF*
Ga0164310_100074584	F016098	AGGGGG	MSGERRYVYMRRTQSGNGVRMRDGEIVYIASIRSLEQFLQGEREFVAFAKMPYRQIQNEDNERNLIYTWCEKCQGLRFFRKIGEDKWKCQTCGIEKTTWELINKLRSILDEGER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164310_10007458

Overview

Ecosystem & Geography

Associated Families

Sequences