NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164311_10154075

Scaffold Ga0164311_10154075


Overview

Basic Information
Taxon OID3300014914 Open in IMG/M
Scaffold IDGa0164311_10154075 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1371
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059532Metagenome133N
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0164311_101540752F100149N/AMFWSEEEIEILRSLWIKPEITSKFIKERYLPHRSIYAIQKKASSLGLTKEKIKIDYDKIREIIL*
Ga0164311_101540753F059532GAGMKNILLLGDLHCGSTEGLWHPDCITREGQKIKLSPLQEELYEKWLELQEKLPNYDAVFLMGDITHGLGSKEFGKDVIDCDLHDQLQCAVKLLKPIVENKKVVVISGSRYHSSIDYDIDRGLAEILNAKFGGAIANVRLKGTGIVINIAHGVGSRPVYLGTRMNQDIFNAILTEHFLKMPDVSVIIRAHFHVYSYFSICNKHFIYIPGWNAIRKNRFAIRWYFRQPDIGAVLLNIDDNDDI
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