NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134561_1002042

Scaffold Ga0134561_1002042


Overview

Basic Information
Taxon OID3300014955 Open in IMG/M
Scaffold IDGa0134561_1002042 Open in IMG/M
Source Dataset NameHuman fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10025
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bologna
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6539
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location NameTanzania
CoordinatesLat. (o)-3.6347588Long. (o)35.0828588Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067720Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0134561_10020429F067720AGGAGGMASTAHEHFVDANKMYAVQEQFRCATKMVCGRFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSAARCAART*
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