NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134561_1038923

Scaffold Ga0134561_1038923


Overview

Basic Information
Taxon OID3300014955 Open in IMG/M
Scaffold IDGa0134561_1038923 Open in IMG/M
Source Dataset NameHuman fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10025
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bologna
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location NameTanzania
CoordinatesLat. (o)-3.6347588Long. (o)35.0828588Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073574Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0134561_10389232F073574AGGAGGMLLPAAVRPYAADVDGTDSRVRCAIVLNGSKDLRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPNGDVPLFDSRCDGYANALDDRQPPAPIPLHPAICPKCRNAAFQLRL

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