NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134299_1045055

Scaffold Ga0134299_1045055


Overview

Basic Information
Taxon OID3300014959 Open in IMG/M
Scaffold IDGa0134299_1045055 Open in IMG/M
Source Dataset NameMarine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubation
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBattelle Memorial Institute, Gulf Coast Restoration Organization
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location
Location NameNorway: Trondheimsfjord
CoordinatesLat. (o)63.43Long. (o)10.43Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066739Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0134299_10450552F066739N/AMVTGGDQDVQDELISLQNKGVALKADHIDDRSFVFKCSPVKLEKAFIRQWICKHWLDDEWCELYKGEKGGFYPEAKDFARQKIGQMRHANWLYNQKSVPHIYSQGKITAEKDSGNWSDVLTSVLKSV*

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