Scaffold Ga0134316_1000024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134316_1000024

Scaffold Ga0134316_1000024

Overview

Basic Information
Taxon OID	3300014960 Open in IMG/M
Scaffold ID	Ga0134316_1000024 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0709
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16081
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (82.35%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012965	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134316_10000242	F012965	AGG	MSIATVIQNVANEAGYTVESNIFTSNETTTKQLLAIAQRINRDMFEAYPWPKCYASGSITLVGGQATYALPAAFSRYQYESFWNKSTRWRVLGPMTEQEYAEIKGFGLEPTVYQRFQIRGMSNNELLINPTPGANNDGDIIIFEYIADRSVIPVTWTASTSFAANAYCSYNGNYYQTTSGGTTGATAPTHTSGSVSDGGVTWTYYNGPYDKFLADTDTSIFQEKLLEQGVLERFAEIHGLDSIRPVFLQQLHEEFSRTYSGKVVWAGGSNRPLQYARAGVAVFGTWI*

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