Scaffold Ga0134526_1000104

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134526_1000104

Scaffold Ga0134526_1000104

Overview

Basic Information
Taxon OID	3300014961 Open in IMG/M
Scaffold ID	Ga0134526_1000104 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Freiburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	53892
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (89.58%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Source Dataset Sampling Location
Location Name	Germany: Freiburg
Coordinates	Lat. (^o)	48.0	Long. (^o)	8.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087336	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134526_100010438	F087336	GAGG	MVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*

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