NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134315_1000307

Scaffold Ga0134315_1000307


Overview

Basic Information
Taxon OID3300014962 Open in IMG/M
Scaffold IDGa0134315_1000307 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12047
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0134315_10003072F004112AGGMIKGHQDKKVDSYKQTRLLMFTMVRLMGDPKSAPKTPEALWELPGDEKPNQINDEEYREIFKRLSNV*
Ga0134315_10003074F011844GAGMAQILGSAQNVNIDVAGGTSYKPLVCLRTSSVNTTMDSTTDQTNCGVLTSPSEPQMTIDFDAICETAAATLATPSVSYKELLSAMVNKTLVAVQVQNPVVSGSSAGAYYYHQFSGYITDLTLNQASAEFMNFSGTIQSSGALDITV*
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