Scaffold Ga0134315

Basic Information
Taxon OID	3300014962 Open in IMG/M
Scaffold ID	Ga0134315_1001975 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014962 Open in IMG/M

Scaffold ID

Ga0134315_1001975 Open in IMG/M

Source Dataset Name

Surface water microbial communities from Bangladesh - BaraHaldiaSW0309

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Tennessee

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3793
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3793

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Bangladesh: Bara Haldia, Matlab upazilla

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F010616	Metagenome / Metatranscriptome	301	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10019751	F004695	AGGA	MLDKQNLVVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPQGKVNFEFERLHENDELGSRQAMKMALHFINSKNDSYSIIRDWAQDALLHKTGVVMVSPVRNPITQYKEVEGTRDQLRSFEIMAAEKGLVAKRQQMRRIDVNLEGVMQETMMDETGSPVEPNGEEVADAIKANTVYRAKYKLTGYSTNIQIKHVAQHYFVCNPTIPRIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHASYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKYSRVIMLTTAWIRKDVDGDGEEEIVEVCYSGSYVLYVKEVDFIPLANMCPKPIVGNFFGYSLAERLVPMQEYGTAISRAEMSFAMQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPAKHVYEFAPMQGNLAYVQSSMERFEADKMAVIGMTSPGDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLKDVIYLTWKTLIQYAEDFNIQQLASACGQGAEFMDAKSMDNYEFIDRKLISIDLALGF
Ga0134315_10019753	F006264	N/A	MEDFSAIFQQKLSGQAEVCARKTLEWLQKDLQGGFKLTPEEIYYLANAANIMLDIRDRYGKK*
Ga0134315_10019754	F010616	N/A	VMGPLEQVAVGSRINKYGQNVPEKYTWIDPRTEELIMRNANGTFSKVGQGLYTYLVGEKGAGTWPLIDRDIVTVTEKNIANPWA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134315_1001975

Overview

Ecosystem & Geography

Associated Families

Sequences