NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0134523_1005539

Scaffold Ga0134523_1005539


Overview

Basic Information
Taxon OID3300014963 Open in IMG/M
Scaffold IDGa0134523_1005539 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from elderly subjects during probiotic consumption in Boston, USA - meta_42827d56
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13740
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Elderly Subjects During Probiotic Consumption In Boston, Usa

Source Dataset Sampling Location
Location NameUSA: Boston
CoordinatesLat. (o)42.3601Long. (o)-71.0589Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039198Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0134523_100553914F039198AGGAGMRITNTEIQGTKYVQIYLTEEELQKKDIKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.