NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182827_10024605

Scaffold Ga0182827_10024605


Overview

Basic Information
Taxon OID3300014967 Open in IMG/M
Scaffold IDGa0182827_10024605 Open in IMG/M
Source Dataset NameFreshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Ka
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Source Dataset Sampling Location
Location NameKuujjuarapik
CoordinatesLat. (o)55.275009Long. (o)-77.758484Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097376Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0182827_100246052F097376AGGAGMKKAVAPKKSKTAADVVSQKKQAKSGPVELDLAELKKVSGGLPRGGGWVAAK*
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