Scaffold Ga0157379_10335979

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157379_10335979

Scaffold Ga0157379_10335979

Overview

Basic Information
Taxon OID	3300014968 Open in IMG/M
Scaffold ID	Ga0157379_10335979 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1381
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020030	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157379_103359791	F020030	AGGGGG	VQRKLRVLFFVEGFTDIRFVAGLSQICDLTMAVPAHAYAESGLKDRVAASGAQLVVHEIPGGRLAFQARSFLYLWRVARTFDVILAQEVLRGALNATLVGALRGVPVVTYMGIAPVEYFRCRRERGRIGIVGALVGEAVIRTLMTINGRLATRCLAMGPYLRDIALRSCPRSEIGLYYGVDVDRFRPADAMERAR

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