NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157379_12452085

Scaffold Ga0157379_12452085


Overview

Basic Information
Taxon OID3300014968 Open in IMG/M
Scaffold IDGa0157379_12452085 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012683Metagenome278Y
F034087Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0157379_124520851F034087N/AMTMKSWVLHRVAGRSDLPPRERGHEPDLDADAIPREQGVATADALRPGADLGVYAPLISAVRDELEHFVVSHVRLHVTIADRDRFLLTSVGVRSPG
Ga0157379_124520852F012683N/ADVSRVALLIDVSLPALQARVRAGDRIQPAWGRFVERLSGYGLPTFPHVRPLRTSGPLATLVVAYRS*
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