Basic Information | |
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Taxon OID | 3300014969 Open in IMG/M |
Scaffold ID | Ga0157376_10000015 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 275370 |
Total Scaffold Genes | 252 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 128 (50.79%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003710 | Metagenome / Metatranscriptome | 473 | Y |
F008503 | Metagenome | 332 | Y |
F010067 | Metagenome | 309 | Y |
F081482 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157376_10000015159 | F010067 | N/A | MTDDDQRSDEARENFAYFSNEYAQALQAFKTIEAQSSTLLLMGVSDELRGFIEQFITMASGTKALAEERGETHFAEWFGELIRKAEALRGEIVPH* |
Ga0157376_100000152 | F008503 | N/A | MKKTLIVVALIALVVWVISWFRVPEAVTASAAKPWPGGGSLDSVDNRFPPSQANAASAKLMALAKALPKNDAIGAFVGRETARGELAIGGSPALPDVTAIRELLLREPIVWQRREGIGGGNDLNAERAAQMSVARALVATALVKVRANDPAAWDDLHAAWNLARSLDGHPQMMVRTAAMTIARMINAAAWKMPVPAPAWLGELQQRDAVPQLLESYQFQTASYAKDGLRLFPTKMLADSVDHDRGIAEELAKETRCDVKPRANELGVDLTSVWRRAFRYRAEREATANALRAREGHPIERTSRCSDGQWTFDTTMVRFTHDIAPVAPDRGMPLALRVKP* |
Ga0157376_1000001573 | F003710 | N/A | MLIKGMTEQEIRVLQEFRRLAVESLGVAAIKAIKHPAGGGEGPAFSLVDKGMLTTDAARENFSLTEKAKEFLSYDPKPEFEEAGSAVEEPVVVE* |
Ga0157376_1000001576 | F081482 | AGG | VVESHFGLLNAVQRPQVTMLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS* |
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