NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157376_10642593

Scaffold Ga0157376_10642593


Overview

Basic Information
Taxon OID3300014969 Open in IMG/M
Scaffold IDGa0157376_10642593 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000485Metagenome / Metatranscriptome1087Y
F009770Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0157376_106425931F000485AGGAVDHHITIDEQGEGGVQAVCSCGWRSPVSGTGKTDGTMDPLQRTTDAGDL
Ga0157376_106425933F009770AGCAGGVHAAGRPGGSPGRRALAVILAVIGFLAIIAGILYLAGAANSLHFMVGSVHKGHHLIRAGVSFVAGAGLLAGAWFAARAGVNSRR*

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