NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167669_1005716

Scaffold Ga0167669_1005716


Overview

Basic Information
Taxon OID3300015024 Open in IMG/M
Scaffold IDGa0167669_1005716 Open in IMG/M
Source Dataset NameArctic sediment microbial communities from supraglacial cryoconite, Rabots glacier, Tarfala, Sweden (Sample Rb cryoconite)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8521
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRabots glacier, Tarfala, Sweden
CoordinatesLat. (o)67.910855Long. (o)18.470863Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083559Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0167669_10057164F083559AGAAGGVNDCAALDSPKSPSNYSSSKPSLIDLSVLPHTVHEFGVEARKVGKAWEAAFNGPIQSWADAETGQTTYGVTVRLSRLKDPVTHELYSTNILFYLPEDAMHGMHNVYDMARRFPFTRIRGPRTPVPHCPPRIGNLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVMLPDGLFIHDVGVYGGYLDPQERPSQLELQHLFGGIEFVPGKTGTQEDLFLTELGENVWVKGIVGNAVDELHVESYKNSVRLPSARTDKVLIGARSMSETKLLPYFESADPSGLRGYGLCGFVDGLPPAIGAEVWEHVHRVGLGSNFIPSPELGGHIGLIHVVLERNNPAYPETHDPAYPDIEEQYEGWVVWLDFDENGAPHVKACLRAITPDDVPRCYQGAGELFDTKRVAFPISLYRVGESLRVGYGWGDRALFQAEFDYQTVVRRLAA*
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