NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137420_1087164

Scaffold Ga0137420_1087164


Overview

Basic Information
Taxon OID3300015054 Open in IMG/M
Scaffold IDGa0137420_1087164 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005616Metagenome / Metatranscriptome395N
F071477Metagenome122Y
F092786Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0137420_10871641F071477N/AMGMPAAFQWARLKADVKCALRKGAWYRILKLVPNPE
Ga0137420_10871642F005616GAGMIPQGGENLRGEPLDFRIPRAGDRDLAFRGWLLSHAEERGGSPALTRGVDIDIYLTIRLRLVAHLCRWSLRDGEGLREEHRVAVHDSAAGLLEWLKQESSGRLDATGKRAWVRACAAWPGLKREAVERVD*
Ga0137420_10871643F092786N/ADIADPVLDELVRRKQMVSHVQLAQYTGAGENTNLVILEFPNWAALDTYDAKLDEASRAVLHKPWSEAIVAFPELRRLVRIEIYTRS*

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