Scaffold Ga0167645_100091

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167645_100091

Scaffold Ga0167645_100091

Overview

Basic Information
Taxon OID	3300015068 Open in IMG/M
Scaffold ID	Ga0167645_100091 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river))
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13524
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.056923	Long. (^o)	-50.459608	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009274	Metagenome / Metatranscriptome	320	Y
F084486	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167645_10009113	F009274	N/A	MPVWIARRAVPAVWKRIPWRMVWTVVLWLGAKGRDRVEHNLTEKEQREFWRLVKKSKGRPTSLPQRDRTRLKNIAGKAVRG*
Ga0167645_1000918	F084486	GAG	MIDGSSGLSSKALRVEQARIGRFLESMAKHRKALELAIEEGFGGTLDPAEWRKTFESAEPQDANRTMVVTGDHSAVLNAYVEILKASAGSRLVGLLPYRRPHAAQTFEALVEDGCLTADQAAELNVAYAIEGRLEHASPDVDAGEVLEAIERLRKALPGLIEAVLAWLEHHGVRLDEQR*

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