Scaffold Ga0167633_101243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167633_101243

Scaffold Ga0167633_101243

Overview

Basic Information
Taxon OID	3300015069 Open in IMG/M
Scaffold ID	Ga0167633_101243 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6632
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156843	Long. (^o)	-50.082361	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023191	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167633_1012435	F023191	N/A	MQILNQLETQPIPIEEEEKRHGRRLLIGMLCAVLLTSAVLGGYLYLRKRHERQIAANLVVENKKKAPKVEVFVDEATVDGKTTLLGGTIHNISDESLHNVAVELQLRRRVGGGIETRAVTPDKTELPPDGTARYTLELPVQNYISVTFLRVIAGDNHAEVAFRALPGAPRPPMDSPASKTVIVNRPAPKGEEFLNTPSNPGKVP*

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