NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167633_102242

Scaffold Ga0167633_102242


Overview

Basic Information
Taxon OID3300015069 Open in IMG/M
Scaffold IDGa0167633_102242 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4163
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156843Long. (o)-50.082361Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0167633_1022423F096991AGAAGVAANPPQSTRQILKRRSFLALFPGALAGAAFIPLLDSYSKALGQSRGQTDPKFTTPACWLDVAAPFIVEDAEIGLHSEIVLTSDTFVGAKGYEDGLDATEYEIYLYDADGKAVGTDGVARRLLVPAMQTTVLSVREILGDGRKFWGGMRIRLRPKGRQPMHASDLFSSAFVRWKTPASFTNVHANPDPLEWQRPDRFFYSMPFPPLTEYESVFSLFNPYGENSLGAISLYDQLGSKLKEVPYELKPHSSLLFDLRQGDFVSDTRRGFISFEEQNHHDAKRLDPGGGTIAITNQQGSVKGFGYLLIKRAGTSRFSVEHPIHQAPFKPLPAPAPFDATGRFKAKNILYTPLLFRSARIGGLTLESRFHFSSGAPLEEFLWINPFVTDSHGNVAWQVTADAKLPETIAARQIERGAIKLGGMQSCMLDCAQLPLPKTFSGGLSLAVAPTTNHTLMKVEISVKEWGAHAFTHFRPGLQSARGYQASPPRGGLATDYIASGARLERSGSKLVRDEVIGVMNIDDKATTGRPVLEIFTASGLLARVDLGEVPAFACRHYLLSELSSGKIGSRDLSLRLVDAQATLLMSVVHLDYVRRDLALDHGSDRFSTFNDYSCKASA*
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