Scaffold Ga0167636_1001376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167636_1001376

Scaffold Ga0167636_1001376

Overview

Basic Information
Taxon OID	3300015075 Open in IMG/M
Scaffold ID	Ga0167636_1001376 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4648
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156387	Long. (^o)	-50.083767	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073513	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167636_10013764	F073513	AGG	MRAVPGLIAFLVGAALLAAPWWSSTLPRSDYPLVAVLGTVFAAIGVFVALPESWPRMRALFFALFMATFGLVCAALALTPLHPAPDGTWTIGGVAGFVTSEPMPLWARAVAGFFAVVCLGTAVLGVWGLVRDLFGRRAGERADPPA*

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