NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167655_1001561

Scaffold Ga0167655_1001561


Overview

Basic Information
Taxon OID3300015086 Open in IMG/M
Scaffold IDGa0167655_1001561 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6139
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.901082Long. (o)18.428257Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096991Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0167655_10015614F096991N/AVGAKGYEDGADATEYEIYLYDADGQAVGTGGVARRLSVPAMQMTVLSLREILGDGRKFRGGMRIRLRPKGRQPMHASDLFSSAFVRWKTAASFDNVHANPDPLEWQRPDKFFYSMPFPPLAEYETVFSLFNPYAEQSLGAITLYDPLGVKLHDVPYELKPHASLLFDLRRAEFISDARRAFGSSPQQNHRDEKLLTPDGGTLAVTNQQGSVKGFGYLLINRAGTPRFSVEHPIHQAPFKPVPAPEPFDAVGRFKAKNVLYTPLLFRSRRIGGVTLESRFHFSSGAPLEEFLRINPFITDSAGNVAWQITPETKLPATIAPQQIERGVIRLGGMQSCRLDCAELPLPKTFSGGLSLAVAPTTNHTLMKVELSVKEWGAHAFTHFRPGLQSARGYQASPPRGGLATDYIASGARVEQNGNKIVRDEVIGIMNIDDKGVGGRPTLEVFTSGGLLTRIELGEVPSFACRHYLLSDLSSGKIGSHDLSLRLIDEHATLLMSVVHLDYVRRDLALDHGSDRFSTFNDYSCKASA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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