Scaffold Ga0167655_1006733

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167655_1006733

Scaffold Ga0167655_1006733

Overview

Basic Information
Taxon OID	3300015086 Open in IMG/M
Scaffold ID	Ga0167655_1006733 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2401
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.901082	Long. (^o)	18.428257	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034274	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167655_10067331	F034274	N/A	QQPNGAIQLYFPNAGGVGRMTSTDDGQTWTGPIQTQSHTTGPVQGAAVAPDGTPYFSQDGTGFVNVFRGLNGESVKNVFPRCCGYAESLAVDTTGLAQVAFYSNADPDGTFLYEKLGADLSPAGSTPLKPTEHRVPLVADHSGTTFLAWPPGNPATGVTVVPFRGGSPAGDGFDFRGSFVGGDPHMALAVDTKDELWIVWTGGGAVHAARSRSHGQHFGAAVSVPVTGTMYQVSAAGIAGSPGTVEVLVNTGSNLIQQALQPGLSVKVTRKLKKVGKKQIVTRVVQALDDGFGVPTAVFKIGGRTIHANSSGTAKVPAGSGKASAPGYVGASFHVR*

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