NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167623_1000013

Scaffold Ga0167623_1000013


Overview

Basic Information
Taxon OID3300015161 Open in IMG/M
Scaffold IDGa0167623_1000013 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)201774
Total Scaffold Genes180 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (40.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156516Long. (o)-50.06387Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007987Metagenome / Metatranscriptome341Y
F047601Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0167623_100001317F047601GGAGVRQRERGKKPQRTLFMTENELKKLVNEAVSLHRALTTYGERLKTLKGELIREAKRHKEDFIITDGGGSRWTASGTDGCIARVNFPAPALLSHIATEDETFDKVLALAGESLDDLFESRHYLKPTADFRDKAADALPRRTATQLIDLCQVECSPRVSFETAETKTKER*
Ga0167623_100001318F007987N/AMEAVETGSFTSTTTIAALLFLAAKFPHRQFNSAELSVLSGIGRTAMSQIKNASDSPFSLGKCTLRRLDTWLANHPGFKQQ*
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