Scaffold Ga0167623_1000545

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167623_1000545

Scaffold Ga0167623_1000545

Overview

Basic Information
Taxon OID	3300015161 Open in IMG/M
Scaffold ID	Ga0167623_1000545 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14624
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156516	Long. (^o)	-50.06387	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167623_10005456	F002324	GGAGG	MGEIKLFQICYEGDLTVEVSHAMRRLGAEPNFDQSWHVWLPEGRHSAPLVRYLRQSIGDGARILVAGTQFTVTRDFLLVRHSLTPGADYSELHDAMQRLGIVAELPFESTFVVQSDDRTDVQTLGLALGELCPDDSLMVVGISHDWAYCNSGVSRMHVADDSVEMLFRSF*
Ga0167623_10005459	F013826	GAGG	MAVCWRCPRCSEVSCETDVNAAGMPLACDHCQRAMAADETQCTVCDAPNPWKRRDSLHYRCGECGNTQTFYSRAS*

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